Aligning CAD to Previously Measured Features

Aligning CAD to Previously Measured Features

I have a program previously setup with the canned alignment using one of the hole features on the OD of the disk as the alignment feature. I am trying to update the canned (Plane-Circle-Circle) alignment to use one of the hole features on the ID of the disk. 

Even after the canned alignment you can see from the photos that the part is not in the same alignment as what is shown in CMM-Manager. Feature B1 is shown at "-y" from the machine table while it is actually at "-x". How do you display the correct alignment in CMM-Manager?  

In all previous cases I have had to rewrite the entire program to do this.